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Eino Uikkanen science forum beginner
Joined: 26 Jun 2006
Posts: 2

Posted: Mon Jun 26, 2006 11:06 am Post subject:
Re: Glitch/inconsistency detection in navigation data



"Rune Allnor" <allnor@tele.ntnu.no> kirjoitti
viestissä:1151317297.168309.116350@m73g2000cwd.googlegroups.com...
Quote:  Hi folks.
Assume you are given som 20,000  100,000 points of raw (x,y,z)
navigation data as previously logged on some platform, and are asked
to clean up the data.
My first, naive idea is to use some Kalman filter. So far so good.
However, the data might contain glitches (jumps) or other
inconsistencies
that need to be sorted out before feeding them to the Kalman filter.
How would you go about detecting glitches and maybe even do a
firstpass correction of such data? A manual check of 100,000 data
points doesn't seem as a very tempting prospect...
Rune

I don't know about the systems to exclude irregularities, I doubt if there
are any without some presumptions, e.g. maximum distance between two
consecutive points etc. I will stay tuned to here about such methods.
However, if you after getting rid of the exceptions (errors in data) want to
reduce the number of points in your navigation data, you could apply my
freeware GeoConv. With GeoConv you can reduce the number of points in your
navigation data still maintaining the shape of the track as close to the
original track as possible.
GeoConv: http://www.kolumbus.fi/eino.uikkanen/geoconvgb/index.htm
Eino Uikkanen
http://www.kolumbus.fi/eino.uikkanen/gb/index.htm 

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Andor science forum beginner
Joined: 01 Jul 2005
Posts: 6

Posted: Mon Jun 26, 2006 11:38 am Post subject:
Re: Glitch/inconsistency detection in navigation data



Rune Allnor wrote:
Quote:  Hi folks.
Assume you are given som 20,000  100,000 points of raw (x,y,z)
navigation data as previously logged on some platform, and are asked
to clean up the data.
My first, naive idea is to use some Kalman filter. So far so good.
However, the data might contain glitches (jumps) or other
inconsistencies
that need to be sorted out before feeding them to the Kalman filter.
How would you go about detecting glitches and maybe even do a
firstpass correction of such data? A manual check of 100,000 data
points doesn't seem as a very tempting prospect...

What do you look for in a manual check? 

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Rune Allnor science forum beginner
Joined: 03 May 2005
Posts: 18

Posted: Mon Jun 26, 2006 11:45 am Post subject:
Re: Glitch/inconsistency detection in navigation data



Andor wrote:
Quote:  Rune Allnor wrote:
Hi folks.
Assume you are given som 20,000  100,000 points of raw (x,y,z)
navigation data as previously logged on some platform, and are asked
to clean up the data.
My first, naive idea is to use some Kalman filter. So far so good.
However, the data might contain glitches (jumps) or other
inconsistencies
that need to be sorted out before feeding them to the Kalman filter.
How would you go about detecting glitches and maybe even do a
firstpass correction of such data? A manual check of 100,000 data
points doesn't seem as a very tempting prospect...
What do you look for in a manual check?

Anything that can be said to be a "glitch" or an "irregular feature".
Some of the tracks seem to "jump" sideways on the order of 2Dx
to 3Dx, where Dx is the alongtrack distance between measurements.
Then they get back "ontrack" within a variable number of samples,
say 5 to 20 samples.
I have a couple of ideas about how to *detect* these things, for
manual correction. But then, if there already exists a wheel, why
reinvent it...
Rune 

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Rune Allnor science forum beginner
Joined: 03 May 2005
Posts: 18

Posted: Mon Jun 26, 2006 11:47 am Post subject:
Re: Glitch/inconsistency detection in navigation data



Eino Uikkanen wrote:
Quote:  "Rune Allnor" <allnor@tele.ntnu.no> kirjoitti
viestissä:1151317297.168309.116350@m73g2000cwd.googlegroups.com...
Hi folks.
Assume you are given som 20,000  100,000 points of raw (x,y,z)
navigation data as previously logged on some platform, and are asked
to clean up the data.
My first, naive idea is to use some Kalman filter. So far so good.
However, the data might contain glitches (jumps) or other
inconsistencies
that need to be sorted out before feeding them to the Kalman filter.
How would you go about detecting glitches and maybe even do a
firstpass correction of such data? A manual check of 100,000 data
points doesn't seem as a very tempting prospect...
Rune
I don't know about the systems to exclude irregularities, I doubt if there
are any without some presumptions, e.g. maximum distance between two
consecutive points etc. I will stay tuned to here about such methods.
However, if you after getting rid of the exceptions (errors in data) want to
reduce the number of points in your navigation data, you could apply my
freeware GeoConv. With GeoConv you can reduce the number of points in your
navigation data still maintaining the shape of the track as close to the
original track as possible.
GeoConv: http://www.kolumbus.fi/eino.uikkanen/geoconvgb/index.htm
Eino Uikkanen
http://www.kolumbus.fi/eino.uikkanen/gb/index.htm

Thanks. I'll have a look at it.
Rune 

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Andor science forum beginner
Joined: 01 Jul 2005
Posts: 6

Posted: Mon Jun 26, 2006 12:16 pm Post subject:
Re: Glitch/inconsistency detection in navigation data



Rune Allnor wrote:
Quote:  Andor wrote:
Rune Allnor wrote:
Hi folks.
Assume you are given som 20,000  100,000 points of raw (x,y,z)
navigation data as previously logged on some platform, and are asked
to clean up the data.
My first, naive idea is to use some Kalman filter. So far so good.
However, the data might contain glitches (jumps) or other
inconsistencies
that need to be sorted out before feeding them to the Kalman filter.
How would you go about detecting glitches and maybe even do a
firstpass correction of such data? A manual check of 100,000 data
points doesn't seem as a very tempting prospect...
What do you look for in a manual check?
Anything that can be said to be a "glitch" or an "irregular feature".
Some of the tracks seem to "jump" sideways on the order of 2Dx
to 3Dx, where Dx is the alongtrack distance between measurements.
Then they get back "ontrack" within a variable number of samples,
say 5 to 20 samples.

Sounds like you are witnessing innovation outliers in a small order AR
process (since the signal take some time to get back on track after an
outlier). You can try an mestimate (robust) linear predictor, and
threshold the prediction error for outlier detection. Are the outliers
correlated in the three dimensions eg. you have one in xaxis, then you
have one in yaxis?.
Alternatively, if you have to smooth the data afterwards in any case,
you might be interested in the procedure described here:
G Doblinger: "Adaptive Kalman Smoothing of AR Signals distrubed by
impulses and colored noise", Proc. 1998 IEEE Symp. on Advances in Dig.
Filt. and Sig. Proc., June 56, 1998.
The paper is available on the net.
Quote:  I have a couple of ideas about how to *detect* these things, for
manual correction. But then, if there already exists a wheel, why
reinvent it...

AR modeling can also be useful for automatic correction
(interpolation).
Regards,
Andor 

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Marcel Müller science forum beginner
Joined: 26 Jun 2006
Posts: 1

Posted: Mon Jun 26, 2006 12:33 pm Post subject:
Re: Glitch/inconsistency detection in navigation data



Quote:  However, the data might contain glitches (jumps) or other
inconsistencies
that need to be sorted out before feeding them to the Kalman filter.

It depends on what you call a glitch.
If you are talking about several nonplausible points, try to check
agains physical constraints like maximum velocity (1st derivative) or
maximum acceleration/deceleration (2nd derivative). However, in any case
you need the time. So either deltat between two points must be always
the same or you need tuples of {x,y,z,t}.
Marcel
(f'up) 

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Rune Allnor science forum beginner
Joined: 03 May 2005
Posts: 18

Posted: Mon Jun 26, 2006 12:40 pm Post subject:
Re: Glitch/inconsistency detection in navigation data



Andor wrote:
Quote:  Rune Allnor wrote:
Andor wrote:
Rune Allnor wrote:
Hi folks.
Assume you are given som 20,000  100,000 points of raw (x,y,z)
navigation data as previously logged on some platform, and are asked
to clean up the data.
My first, naive idea is to use some Kalman filter. So far so good.
However, the data might contain glitches (jumps) or other
inconsistencies
that need to be sorted out before feeding them to the Kalman filter.
How would you go about detecting glitches and maybe even do a
firstpass correction of such data? A manual check of 100,000 data
points doesn't seem as a very tempting prospect...
What do you look for in a manual check?
Anything that can be said to be a "glitch" or an "irregular feature".
Some of the tracks seem to "jump" sideways on the order of 2Dx
to 3Dx, where Dx is the alongtrack distance between measurements.
Then they get back "ontrack" within a variable number of samples,
say 5 to 20 samples.
Sounds like you are witnessing innovation outliers in a small order AR
process (since the signal take some time to get back on track after an
outlier). You can try an mestimate (robust) linear predictor, and
threshold the prediction error for outlier detection.

We'll see. My idea is a bit more simplistic/naive, to sheck deviations
in forward direction between time steps. Yours is probably more
computationally efficient.
Quote:  Are the outliers
correlated in the three dimensions eg. you have one in xaxis, then you
have one in yaxis?.

I don't know. I haven't had a very close look at the data yet.
Quote:  Alternatively, if you have to smooth the data afterwards in any case,
you might be interested in the procedure described here:
G Doblinger: "Adaptive Kalman Smoothing of AR Signals distrubed by
impulses and colored noise", Proc. 1998 IEEE Symp. on Advances in Dig.
Filt. and Sig. Proc., June 56, 1998.
The paper is available on the net.

Thanks! I guess there are one or two journal papers based on this
one, if the idea turned out to be good.
Quote:  I have a couple of ideas about how to *detect* these things, for
manual correction. But then, if there already exists a wheel, why
reinvent it...
AR modeling can also be useful for automatic correction
(interpolation).

I was thinking along the lines of Wiener filters for data smoothing,
but I guess we are in the same ball park.
Rune 

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Andor science forum beginner
Joined: 01 Jul 2005
Posts: 6

Posted: Mon Jun 26, 2006 12:54 pm Post subject:
Re: Glitch/inconsistency detection in navigation data



Rune Allnor wrote:
Quote:  Andor wrote:
Rune Allnor wrote:
Andor wrote:
Rune Allnor wrote:
Hi folks.
Assume you are given som 20,000  100,000 points of raw (x,y,z)
navigation data as previously logged on some platform, and are asked
to clean up the data.
My first, naive idea is to use some Kalman filter. So far so good.
However, the data might contain glitches (jumps) or other
inconsistencies
that need to be sorted out before feeding them to the Kalman filter.
How would you go about detecting glitches and maybe even do a
firstpass correction of such data? A manual check of 100,000 data
points doesn't seem as a very tempting prospect...
What do you look for in a manual check?
Anything that can be said to be a "glitch" or an "irregular feature".
Some of the tracks seem to "jump" sideways on the order of 2Dx
to 3Dx, where Dx is the alongtrack distance between measurements.
Then they get back "ontrack" within a variable number of samples,
say 5 to 20 samples.
Sounds like you are witnessing innovation outliers in a small order AR
process (since the signal take some time to get back on track after an
outlier). You can try an mestimate (robust) linear predictor, and
threshold the prediction error for outlier detection.
We'll see. My idea is a bit more simplistic/naive, to sheck deviations
in forward direction between time steps.

The ideas are the same  differencing is the simplest form of linear
prediction (where you predict the future value to be equal to the
current value). The first difference filter can be interpreted as the
prediction error filter. In general, predictors can be made data
adaptive. However, differencing is a good first guess for a linear
predictor. As Marcel writes, you can even threshold the prediction
error based on physical criteria.
Quote:  Yours is probably more
computationally efficient.

No, mine is more costly  you have to compute the data adaptive
predictor (usually a new one every couple of samples).
Quote: 
Are the outliers
correlated in the three dimensions eg. you have one in xaxis, then you
have one in yaxis?.
I don't know. I haven't had a very close look at the data yet.

Would be interesting to know.
Quote: 
Alternatively, if you have to smooth the data afterwards in any case,
you might be interested in the procedure described here:
G Doblinger: "Adaptive Kalman Smoothing of AR Signals distrubed by
impulses and colored noise", Proc. 1998 IEEE Symp. on Advances in Dig.
Filt. and Sig. Proc., June 56, 1998.
The paper is available on the net.
Thanks! I guess there are one or two journal papers based on this
one, if the idea turned out to be good.
I have a couple of ideas about how to *detect* these things, for
manual correction. But then, if there already exists a wheel, why
reinvent it...
AR modeling can also be useful for automatic correction
(interpolation).
I was thinking along the lines of Wiener filters for data smoothing,
but I guess we are in the same ball park.

Yup. Have fun in your Waterworld !
Regards,
Andor 

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Martin Eisenberg science forum beginner
Joined: 11 May 2005
Posts: 28

Posted: Mon Jun 26, 2006 1:01 pm Post subject:
Re: Glitch/inconsistency detection in navigation data



Rune Allnor wrote:
Quote:  Andor wrote:
What do you look for in a manual check?
Anything that can be said to be a "glitch" or an "irregular
feature". Some of the tracks seem to "jump" sideways on the
order of 2Dx to 3Dx, where Dx is the alongtrack distance
between measurements. Then they get back "ontrack" within a
variable number of samples, say 5 to 20 samples.
I have a couple of ideas about how to *detect* these things, for
manual correction. But then, if there already exists a wheel,
why reinvent it...

This may not be of immediate help to you but there's a book titled
"Detection of Abrupt Changes" online at
http://www.irisa.fr/sisthem/kniga/ .
Regarding correction, your problem sounds similar to that of click
removal in audio which has been treated here before, I think, and is
commonly attacked with LPC extrapolation.
Martin

Quidquid latine scriptum sit, altum viditur. 

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Rune Allnor science forum beginner
Joined: 03 May 2005
Posts: 18

Posted: Mon Jun 26, 2006 1:02 pm Post subject:
Re: Glitch/inconsistency detection in navigation data



Andor wrote:
Quote:  Have fun in your Waterworld !

You're in Switzerland, right?
If so, this conversation is rock'n roll... ;)
Nah, not really. Max wave height is somewhere around 1 m.
Rune 

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Rune Allnor science forum beginner
Joined: 03 May 2005
Posts: 18

Posted: Mon Jun 26, 2006 1:08 pm Post subject:
Re: Glitch/inconsistency detection in navigation data



Martin Eisenberg wrote:
Quote:  Rune Allnor wrote:
Andor wrote:
What do you look for in a manual check?
Anything that can be said to be a "glitch" or an "irregular
feature". Some of the tracks seem to "jump" sideways on the
order of 2Dx to 3Dx, where Dx is the alongtrack distance
between measurements. Then they get back "ontrack" within a
variable number of samples, say 5 to 20 samples.
I have a couple of ideas about how to *detect* these things, for
manual correction. But then, if there already exists a wheel,
why reinvent it...
This may not be of immediate help to you but there's a book titled
"Detection of Abrupt Changes" online at
http://www.irisa.fr/sisthem/kniga/ .
Regarding correction, your problem sounds similar to that of click
removal in audio which has been treated here before, I think, and is
commonly attacked with LPC extrapolation.
Martin

Thanks. I'll download the book and look... eh... listen into clicks.
Quote:  Quidquid latine scriptum sit, altum viditur.

Ehum... I am totally aware that I reveal my ignorance for all worrld to
see, but what does that mean...?
The first four words are Latin, but "altum viditur" could be Icelandic
for "knows [it] all"...
Rune 

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Martin Eisenberg science forum beginner
Joined: 11 May 2005
Posts: 28

Posted: Mon Jun 26, 2006 2:49 pm Post subject:
Re: Glitch/inconsistency detection in navigation data



Rune Allnor wrote:
Quote:  Martin Eisenberg wrote:
Quidquid latine scriptum sit, altum viditur.
Ehum... I am totally aware that I reveal my ignorance for all
worrld to see, but what does that mean...?
The first four words are Latin, but "altum viditur" could be
Icelandic for "knows [it] all"...

How weird... It means: "Whatever is written in Latin looks elevated"
(that is, deep .
Martin

I think perhaps the most important problem is that we
are trying to understand the fundamental workings of
the universe via a language devised for telling one
another where the best fruit is. Terry Pratchett 

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JF Mezei science forum beginner
Joined: 26 Jun 2006
Posts: 6

Posted: Mon Jun 26, 2006 9:54 pm Post subject:
Re: Glitch/inconsistency detection in navigation data



Eliminating "stray" waypoints requires knowledge of the situation.
If you are travelling by foot and taking trackpoints every minute, then
a point that is more than 250 metres off the general direction of travel
is an exception. ( running at 15km/h for one minute) If it is an olympic
runner, hen you need to increase that value.
If travelling on a bicycle, you need to know the condition. If on a main
road, a trackpoint doesn't need to be that far off before it is an
exception. But if travelling up a switchback on a mountain pass road in
the alps, then a lot of your points will be "off course" but still very
valid to map your track.
If travelling by car on the same road, your trackpoints may not be taken
at sufficiently close intervals to log some of the switchbacks and log
just a mostly straight road up the mountain with minor ddviations
between each point.
If you have 3 points, A B and C, B can be considred an exception if the
discance between B and the axis AC is greater than some amount. (the
aviation formulary has those equations to calculate distance between a
point and an axis).
Now, if you have 4 points, A B C and D with B and C being odd, the above
logic won't work because B will be within the limits of the AC axis. 

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Tim Wescott science forum Guru Wannabe
Joined: 03 May 2005
Posts: 292

Posted: Mon Jun 26, 2006 10:07 pm Post subject:
Re: Glitch/inconsistency detection in navigation data



Rune Allnor wrote:
Quote:  Hi folks.
Assume you are given som 20,000  100,000 points of raw (x,y,z)
navigation data as previously logged on some platform, and are asked
to clean up the data.
My first, naive idea is to use some Kalman filter. So far so good.
However, the data might contain glitches (jumps) or other
inconsistencies
that need to be sorted out before feeding them to the Kalman filter.
How would you go about detecting glitches and maybe even do a
firstpass correction of such data? A manual check of 100,000 data
points doesn't seem as a very tempting prospect...
Rune
Hey Rune: 
One thing you could do would be to compare the data with the Kalman
filter output, and ignore it whenever there's too much difference. This
causes problems if your system truly moves outside of your 'known good'
band.
Another thing that works is to discount the data when it's glitchy, but
not completely. You could either have two state evolution rules, one
for when the data is 'bad' and another for when it's 'good'. This would
result in the filter being influenced by genuinely bad data, but it
would also result in the filter being able to find it's way home if it
were way off track.
My understanding of Kalman filters is somewhat casual*, but I do know
that the classic construction assumes linear systems excited by Gaussian
noise, and quadratic cost functions. If your underlying systems aren't
linear, if your noise isn't Gaussian or if your cost functions aren't
quadratic then the optimal solution isn't linear anymore, so a plain ol'
Kalman filter is ruled out  search around on the term 'extended
Kalman' for insight in that case.
* I've got to get a good book on this.

Tim Wescott
Wescott Design Services
http://www.wescottdesign.com
Posting from Google? See http://cfaj.freeshell.org/google/
"Applied Control Theory for Embedded Systems" came out in April.
See details at http://www.wescottdesign.com/actfes/actfes.html 

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Ulrich Bangert science forum beginner
Joined: 27 Jun 2006
Posts: 4

Posted: Tue Jun 27, 2006 1:54 am Post subject:
Re: Glitch/inconsistency detection in navigation data



Rune,
this problem is the classical application for so called "robust statistical
methods".
1) Decide for a window length of n data points. This window will be used to
scan through your data for outlier and glitch detection.
2) Get the first n points of data (in case of your three dimensional
problem, cover each dimension on its own)
3) Compute the MEDIAN of the data (= the 50% PERCENTILE) If in doubt how to
compute the MEDIAN, check MATLAB help. The MEDIAN is a very good
approximation to the mean value of your data. However, the MEDIAN is
completely insensitive to outliers and glitches as long as the number of
ourliers within your window is smaller then n/2. Note that you now have a
outlier insensitive measure for the mean of your data. The MEDIAN is to
robust counterpiece to the MEAN.
4) For all data within your window compute the absolute value of the
difference between the data and the median and put the results of this
operation into a buffer array.
5) Multiply all values in your buffer with a scaling constant 1/0.654.
6) Compute the MEDIAN of the the data in your buffer. The MEDIAN of the
buffer values is the so called "MAD" (Median absolute deviation) of the
original values within your window. The MAD is the outlier insensitive
robust counterpiece to the normal standard deviation which is highly
sensitive to outliers. The scaling factor of 1/0.645 makes the MAD directly
comparable to the standard deviation for normal distributed values.
7) A rule of thumb in classical statistics is: If data is more far away from
the mean than 5 time the standard deviation, it is most probably a outlier.
Now that you have robust values available apply this rule to the robust
values: If data is more than 5 time away from the MEDIAN than the MAD then
it is most probably a outlier.
8) If a outlier is detected be sure to remove it from all diemensions.
9) Shift your window by one and go to step 3
10) Repeat for all data
Sounds as if a lot computing power is necessary for the algorithm and yes,
indeed it is. Note that computing the MEDIAN involves ordering the data
within your window in an ascending order and you need to compute a MEDIAN
twice per window shift. Use a fast sorting algorithm!
I use the above method as my standard outlier detection routine whereever i
expect to be confronted with outliers and it works very well. Note that the
length of the window is a compromise between processing time and having
enough values in the window to make significant statistics with. Note also,
that this algorithm detects outliers fairly well but is not well suited if
your your data contains inconsitencies like sudden steps (offsets that
stay).
Regards
Ulrich
"Rune Allnor" <allnor@tele.ntnu.no> schrieb im Newsbeitrag
news:1151317297.168309.116350@m73g2000cwd.googlegroups.com...
Quote:  Hi folks.
Assume you are given som 20,000  100,000 points of raw (x,y,z)
navigation data as previously logged on some platform, and are asked
to clean up the data.
My first, naive idea is to use some Kalman filter. So far so good.
However, the data might contain glitches (jumps) or other
inconsistencies
that need to be sorted out before feeding them to the Kalman filter.
How would you go about detecting glitches and maybe even do a
firstpass correction of such data? A manual check of 100,000 data
points doesn't seem as a very tempting prospect...
Rune



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